Expression profiling using cDNA microarrays

DJ Duggan, M Bittner, Y Chen, P Meltzer, JM Trent - Nature genetics, 1999 - nature.com
cDNA microarrays are capable of profiling gene expression patterns of tens of thousands of
genes in a single experiment. DNA targets, in the form of 3 expressed sequence tags (ESTs), …

[HTML][HTML] AR-V7 and resistance to enzalutamide and abiraterone in prostate cancer

…, Y Chen, TA Mohammad, Y Chen… - … England Journal of …, 2014 - Mass Medical Soc
Background The androgen-receptor isoform encoded by splice variant 7 lacks the ligand-binding
domain, which is the target of enzalutamide and abiraterone, but remains constitutively …

[HTML][HTML] Gene-expression profiles in hereditary breast cancer

I Hedenfalk, D Duggan, Y Chen… - … England Journal of …, 2001 - Mass Medical Soc
Background Many cases of hereditary breast cancer are due to mutations in either the
BRCA1 or the BRCA2 gene. The histopathological changes in these cancers are often …

Molecular classification of cutaneous malignant melanoma by gene expression profiling

M Bittner, P Meltzer, Y Chen, Y Jiang, E Seftor… - Nature, 2000 - nature.com
The most common human cancers are malignant neoplasms of the skin 1 , 2 . Incidence of
cutaneous melanoma is rising especially steeply, with minimal progress in non-surgical …

Ratio-based decisions and the quantitative analysis of cDNA microarray images

Y Chen, ER Dougherty… - Journal of Biomedical …, 1997 - spiedigitallibrary.org
Gene expression can be quantitatively analyzed by hybridizing fluor-tagged mRNA to targets
on a cDNA microarray. Comparison of gene expression levels arising from cohybridized …

Predicting hepatitis B virus–positive metastatic hepatocellular carcinomas using gene expression profiling and supervised machine learning

…, JW Kim, AC Peng, R Simon, Y Li, AI Robles, Y Chen… - Nature medicine, 2003 - nature.com
Hepatocellular carcinoma (HCC) is one of the most common and aggressive human
malignancies. Its high mortality rate is mainly a result of intra-hepatic metastases. We analyzed the …

[HTML][HTML] MicroRNA expression, survival, and response to interferon in liver cancer

…, M Forgues, S Roessler, S Ambs, Y Chen… - … England Journal of …, 2009 - Mass Medical Soc
Background Hepatocellular carcinoma is a common and aggressive cancer that occurs mainly
in men. We examined microRNA expression patterns, survival, and response to interferon …

[HTML][HTML] Prediction of venous metastases, recurrence, and prognosis in hepatocellular carcinoma based on a unique immune response signature of the liver …

…, HL Jia, P He, KA Zanetti, US Kammula, Y Chen… - Cancer cell, 2006 - cell.com
Hepatocellular carcinoma (HCC) is an aggressive malignancy mainly due to metastases or
postsurgical recurrence. We postulate that metastases are influenced by the liver …

EpCAM and α-fetoprotein expression defines novel prognostic subtypes of hepatocellular carcinoma

…, JW Kim, Q Ye, H Jia, A Budhu, KA Zanetti, Y Chen… - Cancer research, 2008 - AACR
The heterogeneous nature of hepatocellular carcinoma (HCC) and the lack of appropriate
biomarkers have hampered patient prognosis and treatment stratification. Recently, we have …

Estrogen receptor status in breast cancer is associated with remarkably distinct gene expression patterns

S Gruvberger, M Ringnér, Y Chen, S Panavally… - Cancer research, 2001 - AACR
To investigate the phenotype associated with estrogen receptor α (ER) expression in breast
carcinoma, gene expression profiles of 58 node-negative breast carcinomas discordant for …